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Monday, July 6, 2020


Predicting the effect of variants on splicing using Convolutional Neural Networks
Mutations that cause an error in the splicing of a messenger RNA (mRNA) can lead to diseases in humans. Various computational models have been developed to recognize the sequence pattern of the splice sites. In recent studies, Convolutional Neural Network (CNN) architectures were shown to outperform other existing models in predicting the splice sites. However, an insufficient effort has been put into extending the CNN model to predict the effect of the genomic variants on the splicing of mRNAs....
PeerJ Computer Science
Mon Jul 06, 2020 03:00
Melatonin improves the germination rate of cotton seeds under drought stress by opening pores in the seed coat
The germination of cotton (Gossypium hirsutum L.) seeds is affected by drought stress; however, little is known about the physiological mechanism affecting germination and the effect of melatonin (MT) on cotton seed germination under drought stress. Therefore, we studied the effects of exogenous MT on the antioxidant capacity and epidermal microstructure of cotton under drought stress. The results demonstrated a retarded water absorption capacity of testa under drought stress, significantly inhibiting...
PeerJ Computer Science
Mon Jul 06, 2020 03:00
Rodents’ responses to manipulated plant litter and seed densities: implications for restoration
Rodent populations in arid grasslands do not always track seed production, possibly due to high levels of plant litter. When natural disturbances are suppressed, litter accumulates becoming physically complex, causing rodents to harvest fewer seeds per equivalent time foraging. It also alters security from predation. Restoring natural disturbances may be an important element in conserving rodent communities. The aim of this study was to assess the influence of two levels of plant litter cover and...
PeerJ Computer Science
Mon Jul 06, 2020 03:00
Intermittent theta burst stimulation facilitates functional connectivity from the dorsal premotor cortex to primary motor cortex
Background Motor information in the brain is transmitted from the dorsal premotor cortex (PMd) to the primary motor cortex (M1), where it is further processed and relayed to the spinal cord to eventually generate muscle movement. However, how information from the PMd affects M1 processing and the final output is unclear. Here, we applied intermittent theta burst stimulation (iTBS) to the PMd to alter cortical excitability not only at the application site but also at the PMd projection...
PeerJ Computer Science
Mon Jul 06, 2020 03:00
Evaluation of psychological stress in scientific researchers during the 2019–2020 COVID-19 outbreak in China
Background Beginning in December 2019, coronavirus disease 2019 (COVID-19) caused an outbreak of infectious pneumonia. The Chinese government introduced a series of grounding measures to prevent the spread of COVID-19. The living and working patterns of many scientific researchers also underwent significant changes during this period. Methods An opportunity sample (n = 251) was obtained in China using a questionnaire with 42 questions on scientific research progress and psychological...
PeerJ Computer Science
Mon Jul 06, 2020 03:00
Novel circulating protein biomarkers for thyroid cancer determined through data-independent acquisition mass spectrometry
Background Distinguishing between different types of thyroid cancers (TC) remains challenging in clinical laboratories. As different tumor types require different clinical interventions, it is necessary to establish new methods for accurate diagnosis of TC. Methods Proteomic analysis of the human serum was performed through data-independent acquisition mass spectrometry for 29 patients with TC (stages I–IV): 13 cases of papillary TC (PTC), 10 cases of medullary TC (MTC), and six cases...
PeerJ Computer Science
Mon Jul 06, 2020 03:00
Lipopolysaccharide regulates thymic stromal lymphopoietin expression via TLR4/MAPK/Akt/NF‐κB‒signaling pathways in nasal fibroblasts: differential inhibitory effects of macrolide and corticosteroid
Background Chronic rhinosinusitis (CRS) is an inflammatory disease of the sinonasal mucosa. Thymic stromal lymphopoietin (TSLP) is associated with T‐helper 2 (Th2) response and induced by pathogen, allergen, toll‐like receptor (TLR) ligands, and cytokines. Fibroblasts are known to be modulators of wound‐healing, from inflammation to tissue remodeling. We examined effect of lipopolysaccharide (LPS) on TSLP production and the underlying mechanisms. We aimed to determine whether the effects of commonly...
International Forum of Allergy & Rhinology
Sun Jul 05, 2020 22:21
Immunotherapy in sinonasal melanoma: treatment patterns and outcomes compared to cutaneous melanoma
Background Although treatment with checkpoint blockade is now accepted as standard of care for cutaneous melanoma, few studies have investigated its role in sinonasal melanoma (SNM). We aimed to evaluate whether immunotherapy was associated with improved survival in SNM and to compare the effect of immunotherapy in metastatic sinonasal and cutaneous melanoma. Methods This was a cohort study of patients included in the United States National Cancer Database who had been diagnosed with sinonasal...
International Forum of Allergy & Rhinology
Sun Jul 05, 2020 21:16
Prevalence of Sleep Disturbance and Potential Associated Factors among Medical Students from Mashhad, Iran
Study Objectives. A very limited number of studies have evaluated the prevalence of sleep problems, and related factors, in Iranian medical students. The aim of this study was to determine the prevalence of sleep disturbance and potential associated factors among medical students of Mashhad University of Medical Sciences, Mashhad, Iran. Methods. In this cross-sectional study, 315 medical students chosen by stratified random sampling participated in the academic year 2018-2019. The Pittsburgh Instrument...
Sleep Disorders
Mon Jul 06, 2020 10:35
Launching a public statewide tele(oral)medicine service in Brazil during COVID‐19 pandemic
ABSTRACT The State of Santa Catarina is located in the South of Brazil, covering an area of 95,730 km2, and is divided into 295 municipalities, with an estimated population of 7.164.788 inhabitants. Specialised medical facilities are centralised in urban centres. The State has 39 registered Oral Medicine (OM) specialists (one per 183,700 inhabitants).
Oral Diseases
Sun Jul 05, 2020 17:54
Current status and future perspectives of minimally invasive surgery in gallbladder carcinoma
In our study, we reviewed 24 studies on laparoscopic surgery and robotic surgery for gallbladder carcinoma (GBC) and analysis the limitations and difficulties of minimally invasive surgery (MIS) for GBC. MIS for GBC is limited to highly screened patients and is considered to be technically feasible in experienced surgeons. However, improvements in technical and instrumental are needed to reduce the associated postoperative complications and implantation metastasis, and to promote MIS in the treatment...
ANZ Journal of Surgery
Sun Jul 05, 2020 21:50
Surgical management of recurrent cutaneous squamous cell carcinoma of the head and neck after definitive surgery and radiotherapy
Surgery is the primary treatment for patients with recurrent head and neck cutaneous squamous cell carcinoma who have previously been treated by definitive surgery and radiotherapy. These patients were found to have high recurrence rates with poor survival justifying consideration for treatment with anti‐PD‐1 immunotherapy strategies. Abstract Background Surgery is the primary treatment for patients with recurrent head and neck cutaneous squamous cell carcinoma (cSCC) who have previously...
ANZ Journal of Surgery
Sun Jul 05, 2020 21:50
Jejunoileal diverticula: a broad spectrum of complications
This is a descriptive study on 26 patients affected by complications of non‐congenital jejunoileal diverticula. Abdominal computed tomography was diagnostic in 35% of patients. Ten (38%) patients had bowel perforation, nine (35%) acute diverticulitis, five (19%) bowel obstruction and two (8%) had intestinal bleeding. Twenty‐one (81%) patients underwent surgery, two (8%) were managed by computed tomography‐guided drainage of collections, and three (11%) were treated with antibiotics. One patient...
ANZ Journal of Surgery
Sun Jul 05, 2020 21:47
Management of adrenocortical carcinoma in Western Australia: a perspective over 14 years
Adrenocortical carcinoma is a rare but aggressive neoplasm that confers a poor prognosis. This article describes the management of adrenocortical carcinoma in Western Australia over the last 14 years and a review of the literature. Achieving an R0 resection is the key in reducing local recurrence which is best performed by high‐volume centres. The ENSAT stage is most predictive of overall survival Abstract Background Adrenocortical carcinoma is a rare but aggressive form of endocrine...
ANZ Journal of Surgery
Sun Jul 05, 2020 21:47
RNA‐seq based profiling of extracellular vesicles in plasma reveals a potential role of miR‐122‐5p in asthma
Abstract Asthma is a heterogeneous disease encompassing several distinct sub‐phenotypes with different aetiologies and treatment responses, but we are lacking markers to differentiate patient subgroups. MicroRNAs (miRNA) can regulate gene expression post‐transcriptionally. Due to their high stability in body fluids, their easy detection, and their functional relevance in asthma, we and others have proposed extracellular miRNAs in non‐invasive clinical samples as biomarkers for asthma. Yet, extracellular...
Allergy
Sun Jul 05, 2020 20:17
Hematological Cancer Patient‐Caregiver Dyadic Communication: A longitudinal examination of cancer communication concordance
Abstract Objective Informal caregivers play a fundamental role in care and decision making with hematological cancer patients. Concordant patient‐caregiver communication is a critical antecedent to high quality decision making. Little is known about patterns of dyadic communication throughout the cancer treatment continuum. The objective of this study was to assess patterns of cancer communication concordance regarding treatment and care among hematological cancer patients undergoing active treatment...
Psycho-Oncology
Sun Jul 05, 2020 20:19
The distinct traits of the UNC13A polymorphism in amyotrophic lateral sclerosis
Objective The rs12608932 single nucleotide polymorphism in UNC13A is associated with amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD) susceptibility, and may underlie differences in treatment response. We aimed to characterize the clinical, cognitive, behavioral, and neuroimaging phenotype of UNC13A in ALS patients. Methods We included 2,216 ALS patients without a C9orf72 mutation to identify clinical characteristics associated with the UNC13A polymorphism. A subcohort...
Annals of Neurology
Mon Jul 06, 2020 11:21
Heterogeneous Electrofreezing of Super Cooled Water on Surfaces of Pyroelectric Crystals is Trigered by Planar‐Trigonal Ions
Electrofreezing experiments of super‐cooled water (SCW) with different ions, performed directly on the charged hemihedral faces of pyroelectric LiTaO 3 and AgI crystals, in the presence and in the absence of pyroelectric charge are reported. It is demonstrated that bicarbonate (HCO 3 ⁻ ) ions elevate the icing temperature near the positively charged faces. In contrast, the hydronium (H 3 O ⁺ ), slightly reduces the icing temperature. Molecular dynamic simulations suggest that the hydrated...
Angewandte Chemie International Edition
Sun Jul 05, 2020 20:58
Phosphorothioate Modification of mRNA Accelerates Rate of Translation Initiation Providing More Efficient Protein Synthesis
Messenger RNA (mRNA) with phosphorothioate modification (PS‐mRNA) to the phosphate site of A, G, C and U with all possible 16 combinations were prepared, and the translation reaction was evaluated using an E. coli cell‐free translation system. Protein synthesis from PS‐mRNA increased in 12 of 15 patterns when compared with that of unmodified mRNA. The protein yield increased 22‐fold when the phosphorothioate modification at A/C sites was introduced into the region from the 5'‐end to the initiation...
Angewandte Chemie International Edition
Sun Jul 05, 2020 18:12
Stereoselective Synthesis of Tropanes via a Retro‐6 p Electrocyclic Ring‐Opening / Huisgen [3+2]‐Cycloaddition Cascade of Mono­cyclopropanated Heterocycles
The synthesis of tropanes via a microwave‐assisted, stereoselective retro‐ 6p electrocyclic ring‐opening / Huisgen [3+2]‐cycloaddition cascade of cyclopropanated pyrrole and furan derivatives with electron‑deficient dipolarophiles is demonstrated. Starting from furans or pyrroles, 8‐aza‐ and 8‑oxabicyclo­[3.2.1]­octanes are accessible in two steps in dia‐ and enantio­selective pure form, being versatile building blocks for the synthesis of pharmaceutically relevant targets, especially for new cocaine...
Angewandte Chemie International Edition
Sun Jul 05, 2020 18:11
Pressure‐Suppressed Carrier Trapping Leads to Enhanced Emission in Two‐Dimensional Perovskite (HA)2(GA)Pb2I7
Lattice compression through hydrostatic pressure is an effective way to tune the structural and optical properties of two‐dimensional (2D) halide perovskites ‐ a new class of emerging materials for photovoltaic and light‐emitting applications. However, few examples exhibit improved photoluminescence (PL) performance of 2D perovskites upon compression. It also remains unclear how the pressure‐induced structural changes affect carrier trapping, which is critical for the optoelectronic properties of...
Angewandte Chemie International Edition
Sun Jul 05, 2020 18:08
Combination of curcumin with adult neural stem/progenitor cells autologous transplantation refines more efficiently damaged cerebral tissue of rat
New Findings What is the central question of this study? Neuroprotective agent, curcumin how can affect restorative action of neural stem/ progenitor cells on the injured rat brain? What is the main finding and its importance? We found that in the presence of curcumin, transplantation of NS/PCs in the context of PuraMatrix reduced the lesion size, reactive inflammatory responses, and boosted survival rate of grafted neurons as well. Besides these findings, transplantation of NS/PCs...
Experimental Physiology
Sun Jul 05, 2020 21:47
Heat acclimation during low‐intensity exercise increases VO2max, Hsp72, but not markers of mitochondrial biogenesis and oxidative phosphorylation in skeletal tissue
Abstract Heat acclimation (HA) increases tolerance to exercise performed in the heat and may improve maximal oxygen uptake (VO2max) in temperate environments. However, it is unknown if HA affects the expression of proteins related to mitochondrial biogenesis and oxidative capacity in skeletal muscle. The purpose of this study was to investigate the effect of HA on skeletal muscle markers of mitochondrial biogenesis and oxidative phosphorylation in recreationally trained adults. Thirteen (7 males...
Experimental Physiology
Sun Jul 05, 2020 21:46
Association between lung function decline and obstructive sleep apnoea: the ALEC study
Abstract Purpose To study changes in lung function among individuals with a risk of obstructive sleep apnoea (OSA), and if asthma affected this relationship. Methods We used data from the European Community Respiratory Health Survey II and III, a multicentre general population study. Participants answered questionnaires and performed spirometry at...
Latest Results for Sleep and Breathing
Mon Jul 06, 2020 03:00
Relationship between specific temporomandibular disorders and impaired upper neck performance
Upper neck impairments are more prevalent in patients with temporomandibular disorders (TMDs) but the differences between specific types of TMDs are unclear. This study evaluated the distribution of such impairments among different forms of TMD. In total, 116 participants (86 women and 30 men, age range 21–75 yr) were investigated. Forty‐two individuals had no TMDs and were assigned to the control group. The remaining 74 patients were assigned to one of three groups based on the Diagnostic Criteria...
European Journal of Oral Sciences
Mon Jul 06, 2020 10:45
Determining the impact of Medicaid expansion on cancer burden
Cancer
Mon Jul 06, 2020 10:22
The effect of Medicaid expansion among adults from low‐income communities on stage at diagnosis in those with screening‐amenable cancers
Background Several states have opted to expand Medicaid under the Patient Protection and Affordable Care Act (ACA), which offers insurance coverage to low‐income individuals up to 138% of the federal poverty level. This expansion of Medicaid to a medically vulnerable population potentially can reduce cancer outcome disparities, especially among patients with screening‐amenable cancers. The objective of the current study was to estimate the effect of Medicaid expansion on the percentage of adults...
Cancer
Mon Jul 06, 2020 10:22
Incidence of hippocampal metastases in non‐small‐cell lung cancer
Abstract Objectives Patients with locally advanced non‐small‐cell lung cancer (LA‐NSCLC) develop brain metastases in 25–50% of cases during the course of their disease. Data on the incidence of metastases occurring in the hippocampus/perihippocampal zones are limited. This is important when considering hippocampal‐sparing brain radiation (HS‐BR), a method that could potentially reduce the neurocognitive impact of such treatment. The aim of this study was to assess the incidence of hippocampal/perihippocampal...
Journal of Medical Imaging and Radiation Oncology
Sun Jul 05, 2020 20:49

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